PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_BC56C7E17.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 826aa    MW: 93188.5 Da    PI: 6.3223
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_BC56C7E17.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.15.8e-1876160191
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            +fY++YA ++GF v+++ks+ + + g + +  +vC+++g+ +e+        + r++ +t+C+a+++ +++ dg  ++t+++leHnH+
  Traes_5BL_BC56C7E17.2  76 NFYKRYALRTGFGVCVKKSSFT-KAGLCRRLLLVCNRWGNGKEDACY-----QARPTAKTNCQATVVARLWGDGMLHLTDVSLEHNHP 157
                            6*****************9998.6777****************9999.....999********************************* PP

                   FAR1  89 lap 91 
                            l+p
  Traes_5BL_BC56C7E17.2 158 LNP 160
                            975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.5E-1676160IPR004330FAR1 DNA binding domain
PfamPF105514.9E-25265357IPR018289MULE transposase domain
PROSITE profilePS509669.371544580IPR007527Zinc finger, SWIM-type
SMARTSM005750.0041555582IPR006564Zinc finger, PMZ-type
PfamPF044345.4E-5557576IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 826 aa     Download sequence    Send to blast
MADLIPGEGE LAFGGNQDDD DAEDASPGSK ELAAMVEAAA AASVELDAAA DRAPPYGDDR  60
TPRDGMVFKS YEEVLNFYKR YALRTGFGVC VKKSSFTKAG LCRRLLLVCN RWGNGKEDAC  120
YQARPTAKTN CQATVVARLW GDGMLHLTDV SLEHNHPLNP SAARFLRCYK TLPSGMSKDL  180
VVRAARGECA TSGGDVEAPP MFDDWGRLKI RDGDVQAINC FFAEMQAKQP NFFYVMDFYV  240
EGHLRSVLWA DSRSREAYQY FSDAIWVDTT CLRSKFNVPL VLFLGVNHHG QLVLLGCGLL  300
SDESTESLLW LFKAWLTCMK GRLPGAMITD ESVAIKAAVR EVFPKTRHRI SDWHIVRSIA  360
EKLGELPEYE SIKVQMEAVI YGSLKDDQFE TRWKNLINRF SLQDNEWVIF LYENRHLWVP  420
SFLKDAFWAG LSVNHRESPG AFFDGSVSHE TTLVSFLSNY MILVQYKYKM EQQDDFESLT  480
SGRVLVSKFP MEEQISKLYT MNMFVKFQDE LKSTLDCQVQ QVSPSSFVVI DLAEQGTGLV  540
TRKYEVVHCM ETNRMECNCG LFQFSGIVCR HALSVLKWQQ VYDIPPCYVL NRWRSDFKQL  600
HALDNPLKDP LVASNHVERY DHISLQCLRL VEIGMVSDDK YQHALKLISD MKRTLLDDNL  660
CRELEQKMSP PERAVVVNGD SHAQPGSSEG GPAKKRRGRP PKRSKEISVE SVSNQCGNKQ  720
ESLLVSSDVS QKGALHSSST ASNLGTHVRA HGVDDLMEEV NANEVSFESR YGVQSSHPNH  780
YGDQLHPGHT LQFGQHMPSA EQSRGVEWVY PTIYQDDQVP YGRRTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559160.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_010235331.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
TrEMBLW5FHA10.0W5FHA1_WHEAT; Uncharacterized protein
STRINGMLOC_4235.30.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-116FAR1-related sequence 6
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]